CRISPRone

CRISPRone report for GCA_000021485.1_ASM2148v1

♦ Seq 1: CP001219.1 Acidithiobacillus ferrooxidans ATCC 23270, complete genome

⇒Summary: seq-len = 2982397 bp; # of CRISPR array = 3; # of cas gene = 8  (type I, IV) .

⇒Visulization of predicted CRISPR-Cas system(s) .

Overview 1 Locus 1: 932338-941623 bp 2 Locus 2: 2115076-2117047 bp Zoom in on locus 1 x5 x11 x5 Zoom in on locus 2 Gene: cas14:cas14 Type: Type-V Location: 932338-933843 bp Gene: unk Type: unknown Location: 933852-934244 bp Gene: unk Type: unknown Location: 934313-935020 bp CRISPR array Location: 934674-934937 bp Num of repeats: 5 Spacers: s1-s4 CRISPR array Location: 934674-934937 bp Num of repeats: 5 Spacers: s1-s4 Gene: cd09708:DinG Type: Subtype-IV-A Location: 935088-937319 bp Gene: cd09705:csf1gr8 Type: Subtype-IV-A Location: 937392-938141 bp Gene: cd09706:csf2gr7 Type: Subtype-IV-A Location: 938138-939199 bp Gene: cd09707:csf3gr5 Type: Subtype-IV-A Location: 939196-939888 bp Gene: cd09739:cas6f Type: other Location: 939999-940628 bp CRISPR array Location: 940764-941379 bp Num of repeats: 11 Spacers: s5-s14 CRISPR array Location: 940764-941379 bp Num of repeats: 11 Spacers: s5-s14 CRISPR array Location: 941357-941623 bp Num of repeats: 5 Spacers: s15-s18 CRISPR array Location: 941357-941623 bp Num of repeats: 5 Spacers: s15-s18 Gene: mkCas0069:cas5 Type: Subtype-I-B Location: 2115076-2116497 bp Gene: COG0640:csa3 Type: Subtype-I-A Location: 2116745-2117047 bp Sorry, your browser does not support inline SVG.

⇒Cas loci & CRISPR arrays: gff file .

⇒Predicted cas genes: protein | gene .

⇒CRISPR arrays :
           [Locus range 934674-934937 bp]: array | spacers
           [Locus range 940764-941379 bp]: array | spacers
           [Locus range 941357-941623 bp]: array | spacers

⇒Miscellaneous: suspicious cas genes and/or false-CRISPRs (link)