GeneStitch: Network Matching Algorithm to Gene Assembly

• This is a project under active development; please let us know if you encounter any problems when using this program, and come back to this page for newer version!
• Ref: Yu-Wei Wu, Mina Rho, Thomas G. Doak, and Yuzhen Ye. Stitching Gene Fragments with a Network Matching Algorithm Improves Gene Assembly for Metagenomics (ECCB 2012 selected paper; Bioinformatics (2012) 28 (18): i363-i369. go to paper)
• Download the software (v 1.2.1) (instruction) (released on Oct 14, 2014)
  What's new:
  -- support SOAPdenovo2
  -- work faster with new hash function
  -- user-friendlier with changed input parameters
  -- RAPSearch2 and FragGeneScan bundled into the system
  
• Older versions
• V1.2 Download the software (instruction)
  
• V1.1 Download the software (instruction)
  Replace BLAST with RAPSearch2 for faster identification of seeding nodes for network matching
• V1.0 Download the software (instruction)
• Contacts: Yu-Wei Wu (yuwwu@indiana.edu) and Yuzhen Ye (yye@indiana.edu)