MinPath

• MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achieving a more conservative, yet more faithful, estimation of the biological pathways for a query dataset.
• Reference: Yuzhen Ye and Thomas G. Doak. A parsimony approach to biological pathway reconstruction/inference for genomes and metagenomes. PLoS Computational Biology, 2009, 5(8): e1000465. doi:10.1371/journal.pcbi.1000465 (Supplementary material)
• Use the server | download the software
• Instructions: how to install and use MinPath locally; how to read MinPath report
• Contact: Yuzhen Ye (yye@indiana.edu)