Mobile Genetic Elements (MGEs) targeted by CRISPR systems
- FASTA files of the MGE contigs identified from the HMP assemblies
- MGE_all (all MGE contigs) (download) [Large file!]
- MGE_nr (nonredundant set @85% sequence identity) (download) [Large file!]
- MGE_sel (selected MGE segments with dense protospacers) (download) [Large file!]
- FASTA files of the CRISPR spacer & repeat sequences, where were used to identify the MGE contigs
- Protospacer information of the MGE contigs (MGE_all) (download) [Large file!]
- Annotation of the MGE contigs (MGE_nr) (download)
- Other supplementary materials
- Supplementary file 1: supplementary Figures & Tables (download)
- Supplementary file 2: spreadsheet of significantly enriched or depleted GO terms associated with the genes in MGE contigs (download)
- Supplementary file 3: a list of proteins that are annotated as associated with bacterial restriction-modification systems (download)
- Ref: Quan Zhang, Mina Rho, Haixu Tang, Thomas G. Doak, and Yuzhen Ye. CRISPRs target a diverse collection of invasive mobile genetic elements in human microbiomes. Genome Biology, 14:R40 (2013)
- Contact: Yuzhen Ye (yye@indiana.edu) (web)
Last modified on Jan 15th, 2013