MetaNetSam: Metabolic Network Sampling

• Introduction: MetaNetSam is an application for sampling subnetworks from metabolic networks.
• Note this is a project under active development; please let us know if you encounter any problems when using this program, and come back to this page for newer version!
• Download latest binary jar file (version 1.1)
• Download latest source codes (version 1.1); Or download from the bitbucket project site
• Download other versions (1.0 binary , source);
• Download KEGG files used to create the network.
• Citation: Dazhi Jiao, Yuzhen Ye, Haixu Tang. (2013) Probabilistic Inference of Biochemical Reactions in Microbial Communities from Metagenomic Sequences. PLoS Comput Biol, 9(3): e1002981. doi:10.1371/journal.pcbi.1002981 (paper link)
  
• Instructions: Install and Run
• A sample usage of MetaNetSam using a toy input file:
  
  The toy input file: download
  
  Using MetaNetSam with this toy input file:
  
  java -cp metanetsam-.jar metanetsam.KeggNetwork -g toy-ko.txt -o test.out
  #toy-ko.list -- the input file with a list of annotated enzymes (KO numbers) #test.out -- the output directory

Last modified on Feb 20th, 2015