PHYLOSHOP

• Reference: Comparing bacterial communities inferred from 16S rRNA gene sequencing and shotgun metagenomics. Neethu Shah, Haixu Tang, Thomas G. Doak and Yuzhen Ye (PSB, 2011, pp 165-176) (paper link)
• Download software: PHYLOSHOP
  • Download the software (v1.01) (file size: 150M; a readme file with simple instructions is included in the package)
    Note: You only need the new phyloshop.py instead of the entire package
    What's new: bugs fixed to work with large input files
  • Download the software (v1.0) (file size: 150M; a readme file with simple instructions is included in the package)
    
• Supplementary document for the PSB paper (including Supplementary Tables 1-4, and Supplementary Figure 1) (download)
• Contact: Yuzhen Ye (yye@indiana.edu) (web)

Last modified on July 26th, 2010