A genomic and metagenomic survey of DGRs associated with T. denticola

• Download DGRscan from GitHub
• Reads identified from metagenomes that are likely from DGR systems (download)
• Reverse transcriptases identified from nine T. denticola genomes (download)
• Accessory genes (HDRC) identified from nine T. denticola genomes (download)
• Target genes identified from nine T. dentidola genomes

Isolate	Locations of the target genes (strand); the gene in the core DGR component is highlighted as core	Genes	Proteins
ATCC35405	TDE0572 gi|42516522|ref|NC_002967.9|: 603634-604794 + TDE0945 gi|42516522|ref|NC_002967.9|: 967268-968380 + TDE1056 gi|42516522|ref|NC_002967.9|: 1085350-1085955 + TDE2101 gi|42516522|ref|NC_002967.9|: 2126709-2125639 - TDE2239 gi|42516522|ref|NC_002967.9|: 2277636-2276644 - TDE2269 gi|42516522|ref|NC_002967.9|: 2306010-2305021 -(core) TDE2515 gi|42516522|ref|NC_002967.9|: 2542147-2541062 -	download	download
atcc35404	HMPREF9721_00792: 860819-861886 - HMPREF9721_00921: 1011285-1012277 - HMPREF9721_00948: 1039630-1040616 - (core) HMPREF9721_01178: 1278531-1279697 - HMPREF9721_01983: 2185458-2186615 + HMPREF9721_02339: 2551459-2552568 + HMPREF9721_02442: 2669550-2670152 +	download	download
atcc33521	HMPREF9735_00652: 770191-771357 + HMPREF9735_00881: 1007753-1008739 + (core) HMPREF9735_00908: 1036113-1037105 + HMPREF9735_01040: 1186667-1187734 + HMPREF9735_01924: 2150145-2150747 - HMPREF9735_02026: 2267721-2268830 - HMPREF9735_02381: 2633080-2634237 -	download	download
otk	HMPREF9723_00530: 524839-525936 - HMPREF9723_00655: 672433-673461 - HMPREF9723_00679: 698207-699187 - (core) HMPREF9723_00912: 943042-944190 - HMPREF9723_01624: 1784893-1786047 +	download	download
sp23	HMPREF9731_00920: 943021-944160 - HMPREF9731_01043: 1088852-1089931 - HMPREF9731_01071: 1119409-1120401 - (core) HMPREF9731_01298: 1350157-1351305 - HMPREF9731_02040: 2200817-2201971 + HMPREF9731_02191: 2329759-2330979 + HMPREF9731_02488: 2632462-2633571 + HMPREF9731_02587: 2744873-2745937 +	download	download
sp32	HMPREF9732_00892: 910995-912701 - HMPREF9732_01611: 1689329-1690585 - (core) HMPREF9732_01851: 1956201 1956473 . + (truncated)	download	download
sp33	HMPREF9733_00058: 62081-62356 - (truncated; length = 92aa) HMPREF9733_00299: 331669-332925 - (core) HMPREF9733_01007: 1108168-1109874 +	download	download
sp37	HMPREF9724_00072: 77406-78545 - HMPREF9724_00195: 223237-224316 - HMPREF9724_00223: 253745-254737 -(core) HMPREF9724_00446: 484947-486095 - HMPREF9724_01182: 1334700-1335854 + HMPREF9724_01330: 1463698-1464918 + HMPREF9724_01608: 1752372-1753481 + HMPREF9724_01705: 1864783 1865847 +	download	download
sp44	HMPREF9734_00070: 76117-77181 - HMPREF9734_00169: 188483-189592 - HMPREF9734_00464: 489829-491049 - HMPREF9734_00615: 618736-619890 - HMPREF9734_01359: 1470654-1471802 + HMPREF9734_01585: 1701439-1702431 +(core) HMPREF9734_01613: 1731860-1732939 + HMPREF9734_01736: 1877631-1878770 +	download	download

Last modified on July 21, 2015