Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS049995_LANL_scaffold_4188 strand: - 4267-4365 ref: 4268-4366

Variable:  SRS049995_LANL_scaffold_4188 strand: - 4904-5002 alnlen 98 mutations 15 involve-A 15 involve-T 0

GCGAGTACAATTCCAACAACGCGTTCATCTACAACGGCAACACGGGCAACGTGAACAACAACAACAAGTATAACACGAACGCCGTGCGTCCGGTTTCC (Template)
GCGAGTACAATTCCAACATCGCGTTCATCTACGGCGGCTTCGCGGGCTACGTGGGCAACAGCTACAAGTATGGCACGGGCGCCGTGCGTCCGGTTTCC (Variable)
Template:  SRS049995_LANL_scaffold_4188 strand: - 4267-4346 ref: 4268-4366

Variable:  SRS049995_LANL_scaffold_4188 strand: - 34528-34607 alnlen 79 mutations 10 involve-A 10 involve-T 0

CGCGTTCATCTACAACGGCAACACGGGCAACGTGAACAACAACAACAAGTATAACACGAACGCCGTGCGTCCGGTTTCC (Template)
CGCGTTCGTCTACAACGGCTACACGGGCGACGTGACCTACAGCAACGGGTATTACACGCACGCCGTGCGTCCGGTTTCC (Variable)
Template:  SRS049995_LANL_scaffold_4188 strand: - 4288-4365 ref: 4268-4366

Variable:  SRS049995_LANL_scaffold_4188 strand: - 5016-5093 alnlen 77 mutations 12 involve-A 12 involve-T 0

GCGAGTACAATTCCAACAACGCGTTCATCTACAACGGCAACACGGGCAACGTGAACAACAACAACAAGTATAACACG (Template)
GCGAGTACAATTCCTTCGACGCGTTCATCTACAGCGGCAGCACGGGCGCCGTGAGCAACAACAGCAAGTGTGGCACG (Variable)
Template:  SRS049995_LANL_scaffold_4188 strand: - 4287-4363 ref: 4268-4366

Variable:  SRS049995_LANL_scaffold_4188 strand: - 34614-34690 alnlen 76 mutations 14 involve-A 14 involve-T 0

GAGTACAATTCCAACAACGCGTTCATCTACAACGGCAACACGGGCAACGTGAACAACAACAACAAGTATAACACGA (Template)
GAGTACAATTCCTACGGCGCGTTCGTCTACAACGGCATCACGGGCTTCGTGTTCAGCTACAGCAAGTATCGCACGA (Variable)