Template:  C1876891 strand: - 11423-11539 ref: 11424-11540
Variable:  C1876891 strand: - 11985-12101 alnlen 116 mutations 19 involve-A 19 involve-T 0

11539      AGGTGGTGCTGGTTGGCGGTAACGCGGACAACAGGTCGAATGCAGGCCTCGCTAACGTGAATACGAATAATGCGCCTTCCGATGCGAATCGTAACATCGGTTCACGCCTATACTTT (revcomp)
           ::::::::::::::::::::  ::::::: :: ::::: :::: :::::::::  :::: :::::  : :::::::::::: ::::: :::: :: ::::::: ::::: : ::::
12101      AGGTGGTGCTGGTTGGCGGTCGCGCGGACGACGGGTCGTATGCGGGCCTCGCTTGCGTGTATACGGGTGATGCGCCTTCCGGTGCGACTCGTGACTTCGGTTCGCGCCTTTGCTTT (revcomp)