Template:  C2209444 strand: + 19942-20055 ref: 19942-20052
Variable:  C2209444 strand: + 19242-19355 alnlen 113 mutations 17 involve-A 14 involve-T 0

19942      TCTTCCACCGAGAACTCGCAGAACAACGCATGGAACGTCAACTTCTCGAATGGCAACACGAACAACAACAAC---AAGTACAACTCCAACGCCGTCCGGGCGGTGGCCGCATT 
           :::::::::::::::::::::: :: :::::::  ::::  ::::::::::::::::::: ::  :: : ::   :::: : :::::: ::::::::::::::::::::::::
19242      TCTTCCACCGAGAACTCGCAGAGCAGCGCATGGCTCGTCGGCTTCTCGAATGGCAACACGTACGGCAGCTACGGCAAGTTCTACTCCACCGCCGTCCGGGCGGTGGCCGCATT