Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  C3869178 strand: + 49995-50101 ref: 49995-50101

Variable:  C3869178 strand: + 49188-49294 alnlen 106 mutations 14 involve-A 12 involve-T 0

AGCGAGAATAGTCAGCATAACAGTTGGATATTGAACTTTGGTAGTGGCAACTTGAACAACAACAACAAGTACAACAGTAACTATGTACGTCCTTGCACAGCGTCTA (Template)
AGCGAGATTAGTCAGCATCACAGTTGGATATTGACCTTTGGTAGTGGCGGCTTGAACGGCATCTACAAGTACAGCAGTTGCTATGTACGTCCTTGCACAGCATTTA (Variable)
Template:  C3869178 strand: + 49995-50101 ref: 49995-50101

Variable:  C3869178 strand: + 8597-8703 alnlen 106 mutations 18 involve-A 16 involve-T 0

AGCGAGAATAGTCAGCATAACAGTTGGATATTGAACTTTGGTAGTGGCAACTTGAACAACAACAACAAGTACAACAGTAACTATGTACGTCCTTGCACAGCGTCTA (Template)
AGCGAGGATAGTCAGCATAGCAGTTGGATGTTGGGCTTTGGTAGTGGCGGCTTGGGCAACGGCTACAAGTGCTACAGTGGCTATGTACGTCCTTGCACAGCATTTA (Variable)