Template:  C4249812 strand: + 2333-2458 ref: 2333-2458
Variable:  C4249812 strand: + 47-172 alnlen 125 mutations 17 involve-A 15 involve-T 1

2333       TTCTAGCAATAACCGTGTTCTTCGTGGATATAACTACAACACTAATTCTGACAACTGGTATACTGGCAACCGTAGTAACAACAATCCTACTAACTCCAACGATAACTATGGTTCGCGTGTTGGCT 
           :: :::::::: ::::: :::::::::::::  ::::  ::::: :::::::: ::::::: ::::: ::::::::::: :: :::::::: ::::: :::::  ::::::::::::::::::::
47         TTTTAGCAATAGCCGTGGTCTTCGTGGATATGCCTACTTCACTATTTCTGACAGCTGGTATGCTGGCTACCGTAGTAACGACTATCCTACTTACTCCTACGATCGCTATGGTTCGCGTGTTGGCT