Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS011529_WUGC_scaffold_3649 strand: + 54597-54710 ref: 54597-54710

Variable:  SRS011529_WUGC_scaffold_3649 strand: + 54327-54440 alnlen 113 mutations 27 involve-A 22 involve-T 3

TGCTTCTGCTTAGCAGTAACGCTAATAACAGTTCTAAAGCTAGCTCTAGTAACTTTAATTCTAATTGAGTTCAGTCAGATTCTAATGCTAATGTCGGCTTCTTTTATATAATT (Template)
TGCTGCTGCTTGGCGGTTACGCTTCTAACAATTCTGGGGCTGGCTCTGGTAACTTTTATTCTCTTTGGATTCGGTCGGGTTCTGGTGCTTATGTCGGCTTCTTTACTACAGTT (Variable)