Template:  SRS013687_Baylor_scaffold_21809 strand: - 1000-1109 ref: 1001-1110
Variable:  SRS013687_Baylor_scaffold_21809 strand: - 28179-28288 alnlen 109 mutations 14 involve-A 13 involve-T 0

1109       CGAGTACAGCGCGACCAACGCGTGGAATTTGAACCTCAACAACGGCAACGCGAACAACAACACTAAGGCAACGAACAAGAACAGAGTTAGGCCAGTTTCAGCACTTTTA (revcomp)
           :::::::::::::::: ::::::::  ::::  ::::::::::::: :::::  :: :: :::::::::::::  :::: ::::::::::::::::::::::: :::::
28288      CGAGTACAGCGCGACCTACGCGTGGCGTTTGCGCCTCAACAACGGCTACGCGGGCAGCAGCACTAAGGCAACGGGCAAGTACAGAGTTAGGCCAGTTTCAGCATTTTTA (revcomp)
Template:  SRS013687_Baylor_scaffold_21809 strand: - 1000-1109 ref: 1001-1110
Variable:  SRS013687_Baylor_scaffold_21809 strand: - 1708-1817 alnlen 109 mutations 15 involve-A 14 involve-T 0

1109       CGAGTACAGCGCGACCAACGCGTGGAATTTGAACCTCAACAACGGCAACGCGAACAACAACACTAAGGCAACGAACAAGAACAGAGTTAGGCCAGTTTCAGCACTTTTA (revcomp)
           ::::: :::::::::: ::::::::  ::::: :::::::: :::: ::::: ::  :: :::::::::::::: ::::  :::::::::::::::::::::: :::::
1817       CGAGTCCAGCGCGACCTACGCGTGGGGTTTGAGCCTCAACATCGGCTACGCGTACGGCAGCACTAAGGCAACGAGCAAGTTCAGAGTTAGGCCAGTTTCAGCATTTTTA (revcomp)