Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS013687_Baylor_scaffold_59360 strand: + 48505-48617 ref: 48505-48617

Variable:  SRS013687_Baylor_scaffold_59360 strand: + 47960-48072 alnlen 112 mutations 15 involve-A 15 involve-T 0

GGTGTCTTGTTCGGCGGTAATGCGAATAACAGCGCGAATGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT (Template)
GGTGTCTTGTTCGGCGGTAATGCGTATAACGGCGCGCTTGCCGGGCTTTCGTACGCGTATACGCATTACTCGGCTACGAATACGACTGCGTCTGTCGGCTCTCGGCTTTGCT (Variable)
Template:  SRS013687_Baylor_scaffold_59360 strand: + 48541-48617 ref: 48505-48617

Variable:  SRS013687_Baylor_scaffold_59360 strand: + 9870-9946 alnlen 76 mutations 12 involve-A 12 involve-T 0

AATGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT (Template)
AATGCCGGGCTTTCGTACGCGCGTACGAATAACGCGGCTACGTATACGGCTGCGTCTTTCGGCTCTCGGCTTTGCT (Variable)
Template:  SRS013687_Baylor_scaffold_59360 strand: + 48543-48617 ref: 48505-48617

Variable:  SRS013687_Baylor_scaffold_59360 strand: + 12800-12874 alnlen 74 mutations 15 involve-A 14 involve-T 0

TGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT (Template)
TGCCGGGCTTTCGTGCGCGTATGCTTATTGCACGGCTACGTCTGCGTATGCGACTATCGGCTCTCGGCTTTGCT (Variable)