Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS013951_WUGC_scaffold_59596 strand: + 17550-17651 ref: 17550-17651

Variable:  SRS013951_WUGC_scaffold_59596 strand: + 17340-17441 alnlen 101 mutations 21 involve-A 21 involve-T 0

ACACTCATCGTTAGCAGCAACGCTAATAATGGTAGTAATGCCAGTCTTAGTAACTTCAATTCTAACAATGGAGTCAGCAATGTCAATTCCAATGTAGGCTT (Template)
ACGCTCATCGTTGGCGGCCGCGCTGATAATGGTGGTAATGCCGGTCTTGGTAGCTTCACTTCTGACTCTGGGGTCGGCATTGTCCATTCCTCTGTGGGCTT (Variable)