Template:  SRS013951_WUGC_scaffold_64263 strand: - 1187-1260 ref: 1188-1260
Variable:  SRS013951_WUGC_scaffold_64263 strand: - 2311-2384 alnlen 73 mutations 10 involve-A 9 involve-T 0

1260       CCGTTGTTGCTCCATCCGGCAATATCAACAACAACAATTACAACAACAGCAACGGTGTTCGCCCATTCTGTAT (revcomp)
           ::::::::::::::::::::::: ::: :: :: :: :::: ::  :::::::::::::::::: :: :::::
2384       CCGTTGTTGCTCCATCCGGCAATTTCAGCATCAGCAGTTACGACGGCAGCAACGGTGTTCGCCCGTTTTGTAT (revcomp)
Template:  SRS013951_WUGC_scaffold_64263 strand: - 1187-1259 ref: 1188-1260
Variable:  SRS013951_WUGC_scaffold_64263 strand: - 1694-1766 alnlen 72 mutations 14 involve-A 13 involve-T 0

1259       CGTTGTTGCTCCATCCGGCAATATCAACAACAACAATTACAACAACAGCAACGGTGTTCGCCCATTCTGTAT (revcomp)
           :::::::::::: :::::: :::::  :  :: :: ::::  :::: :: ::::::::::::: :: :::::
1766       CGTTGTTGCTCCGTCCGGCGATATCGGCCGCAGCATTTACTGCAACTGCGACGGTGTTCGCCCGTTTTGTAT (revcomp)