Template:  SRS013951_WUGC_scaffold_69149 strand: + 41531-41636 ref: 41522-41636
Variable:  SRS013951_WUGC_scaffold_69149 strand: + 2164-2269 alnlen 105 mutations 13 involve-A 13 involve-T 0

41531      TATCGCGGGGGCAACTGGAACAACGGTGCGAACGCTGGTGTGTTCTACCTCAACGGCAACAACTCCCGCAGCAATGCGAACACGAACATCGGCTTCCGTGCCGCT 
           :::::::::::::::::::::: ::::::: ::::::::::::::: :::: :::::  : ::::::::::: :::::  ::::  : :::::::::::::::::
2164       TATCGCGGGGGCAACTGGAACAGCGGTGCGTACGCTGGTGTGTTCTCCCTCTACGGCGCCTACTCCCGCAGCCATGCGGGCACGTCCGTCGGCTTCCGTGCCGCT 
Template:  SRS013951_WUGC_scaffold_69149 strand: + 41522-41636 ref: 41522-41636
Variable:  SRS013951_WUGC_scaffold_69149 strand: + 40939-41053 alnlen 114 mutations 18 involve-A 18 involve-T 0

41522      CGCTGCGTGTATCGCGGGGGCAACTGGAACAACGGTGCGAACGCTGGTGTGTTCTACCTCAACGGCAACAACTCCCGCAGCAATGCGAACACGAACATCGGCTTCCGTGCCGCT 
           :::::::::: ::::::::::::::::  :  ::::::::::::::::::::::: :::: :::::  :  ::::::: ::  ::::  :::: :: :::::::::::::::::
40939      CGCTGCGTGTTTCGCGGGGGCAACTGGGGCGGCGGTGCGAACGCTGGTGTGTTCTGCCTCGACGGCGCCGGCTCCCGCGGCGGTGCGGGCACGGACCTCGGCTTCCGTGCCGCT