Template: SRS013951_WUGC_scaffold_69149 strand: + 41531-41636 ref: 41522-41636 Variable: SRS013951_WUGC_scaffold_69149 strand: + 2164-2269 alnlen 105 mutations 13 involve-A 13 involve-T 0 41531 TATCGCGGGGGCAACTGGAACAACGGTGCGAACGCTGGTGTGTTCTACCTCAACGGCAACAACTCCCGCAGCAATGCGAACACGAACATCGGCTTCCGTGCCGCT :::::::::::::::::::::: ::::::: ::::::::::::::: :::: ::::: : ::::::::::: ::::: :::: : ::::::::::::::::: 2164 TATCGCGGGGGCAACTGGAACAGCGGTGCGTACGCTGGTGTGTTCTCCCTCTACGGCGCCTACTCCCGCAGCCATGCGGGCACGTCCGTCGGCTTCCGTGCCGCT Template: SRS013951_WUGC_scaffold_69149 strand: + 41522-41636 ref: 41522-41636 Variable: SRS013951_WUGC_scaffold_69149 strand: + 40939-41053 alnlen 114 mutations 18 involve-A 18 involve-T 0 41522 CGCTGCGTGTATCGCGGGGGCAACTGGAACAACGGTGCGAACGCTGGTGTGTTCTACCTCAACGGCAACAACTCCCGCAGCAATGCGAACACGAACATCGGCTTCCGTGCCGCT :::::::::: :::::::::::::::: : ::::::::::::::::::::::: :::: ::::: : ::::::: :: :::: :::: :: ::::::::::::::::: 40939 CGCTGCGTGTTTCGCGGGGGCAACTGGGGCGGCGGTGCGAACGCTGGTGTGTTCTGCCTCGACGGCGCCGGCTCCCGCGGCGGTGCGGGCACGGACCTCGGCTTCCGTGCCGCT