Template:  SRS014459_WUGC_scaffold_31762 strand: + 44412-44528 ref: 44412-44528
Variable:  SRS014459_WUGC_scaffold_31762 strand: + 43735-43851 alnlen 116 mutations 10 involve-A 10 involve-T 0

44412      CGTTTGCCGATTTGTGGGGGCAACTGGAACAACACTTCCAACGCTGGTGTGTTCAATGTGAACCTGAACAACCCTCGGTCCAACTCCAACAGCAATGTTGGCTTTCGCTCCGCTTT 
           ::::::::::::::::::::: :::::: : :::::::: :::::::::::::::::::::::::: :: :::::::::::::::::  ::::  :::::::::::::::::::::
43735      CGTTTGCCGATTTGTGGGGGCTACTGGAGCGACACTTCCTACGCTGGTGTGTTCAATGTGAACCTGCACGACCCTCGGTCCAACTCCTCCAGCGGTGTTGGCTTTCGCTCCGCTTT 
Template:  SRS014459_WUGC_scaffold_31762 strand: + 44412-44527 ref: 44412-44528
Variable:  SRS014459_WUGC_scaffold_31762 strand: + 60116-60231 alnlen 115 mutations 14 involve-A 14 involve-T 0

44412      CGTTTGCCGATTTGTGGGGGCAACTGGAACAACACTTCCAACGCTGGTGTGTTCAATGTGAACCTGAACAACCCTCGGTCCAACTCCAACAGCAATGTTGGCTTTCGCTCCGCTT 
           ::::::::::::::::::::: ::::::::: ::::::: ::::::::::::::  :::: ::::: ::: :::::::::: :::::  : ::  ::::::::::::::::::::
60116      CGTTTGCCGATTTGTGGGGGCTACTGGAACAGCACTTCCGACGCTGGTGTGTTCCGTGTGCACCTGGACAGCCCTCGGTCCGACTCCGGCGGCTCTGTTGGCTTTCGCTCCGCTT