Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS014459_WUGC_scaffold_31762 strand: + 44412-44528 ref: 44412-44528

Variable:  SRS014459_WUGC_scaffold_31762 strand: + 43735-43851 alnlen 116 mutations 10 involve-A 10 involve-T 0

CGTTTGCCGATTTGTGGGGGCAACTGGAACAACACTTCCAACGCTGGTGTGTTCAATGTGAACCTGAACAACCCTCGGTCCAACTCCAACAGCAATGTTGGCTTTCGCTCCGCTTT (Template)
CGTTTGCCGATTTGTGGGGGCTACTGGAGCGACACTTCCTACGCTGGTGTGTTCAATGTGAACCTGCACGACCCTCGGTCCAACTCCTCCAGCGGTGTTGGCTTTCGCTCCGCTTT (Variable)
Template:  SRS014459_WUGC_scaffold_31762 strand: + 44412-44527 ref: 44412-44528

Variable:  SRS014459_WUGC_scaffold_31762 strand: + 60116-60231 alnlen 115 mutations 14 involve-A 14 involve-T 0

CGTTTGCCGATTTGTGGGGGCAACTGGAACAACACTTCCAACGCTGGTGTGTTCAATGTGAACCTGAACAACCCTCGGTCCAACTCCAACAGCAATGTTGGCTTTCGCTCCGCTT (Template)
CGTTTGCCGATTTGTGGGGGCTACTGGAACAGCACTTCCGACGCTGGTGTGTTCCGTGTGCACCTGGACAGCCCTCGGTCCGACTCCGGCGGCTCTGTTGGCTTTCGCTCCGCTT (Variable)