Template:  SRS014923_WUGC_scaffold_16003 strand: + 38876-38990 ref: 38876-38990
Variable:  SRS014923_WUGC_scaffold_16003 strand: + 38293-38407 alnlen 114 mutations 17 involve-A 17 involve-T 0

38876      CGCTGCGTGTATCGCGGGGGCAACTGGAACAACGGTGCGAACGCTGGTGTGTTCTACCTCAACGGCAACAACTCCCGCAGCAATGCGAACACGAACATCGGCTTCCGTGCCGCT 
           :::::::::::::::::::::  ::::  :: :::::::  :::::::::::::: ::::: :::: ::::::::::::::  ::::  : :: :: :::::::::::::::::
38293      CGCTGCGTGTATCGCGGGGGCGGCTGGGGCAGCGGTGCGCGCGCTGGTGTGTTCTGCCTCAGCGGCGACAACTCCCGCAGCCTTGCGGGCGCGTACCTCGGCTTCCGTGCCGCT 
Template:  SRS014923_WUGC_scaffold_16003 strand: + 38885-38990 ref: 38876-38990
Variable:  SRS014923_WUGC_scaffold_16003 strand: + 262-367 alnlen 105 mutations 15 involve-A 15 involve-T 0

38885      TATCGCGGGGGCAACTGGAACAACGGTGCGAACGCTGGTGTGTTCTACCTCAACGGCAACAACTCCCGCAGCAATGCGAACACGAACATCGGCTTCCGTGCCGCT 
           :::::::::::: :::::  :: ::::::: ::::::::::::::: :::::::::: ::::::::::: ::  ::::: : ::  : :::::::::::::::::
262        TATCGCGGGGGCCACTGGGGCAGCGGTGCGGACGCTGGTGTGTTCTCCCTCAACGGCTACAACTCCCGCGGCCTTGCGAGCGCGGGCCTCGGCTTCCGTGCCGCT