Template:  SRS014923_WUGC_scaffold_17878 strand: - 3357-3465 ref: 3354-3466
Variable:  SRS014923_WUGC_scaffold_17878 strand: - 3902-4010 alnlen 108 mutations 14 involve-A 14 involve-T 0

3465       GGGTGTCTTGTTCGGCGGTAATGCGAATAACAGCGCGAATGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCT (revcomp)
           :::::::::::::::::::  ::::  :::: :::::  ::::::::::::::::::: ::::: ::::: ::::: :: ::::: :::::::::::::::::: :::
4010       GGGTGTCTTGTTCGGCGGTTCTGCGGCTAACGGCGCGGCTGCCGGGCTTTCGTACGCGCATACGCATAACGCGGCTTCGTATACGCATGCGAATATCGGCTCTCGGCT (revcomp)
Template:  SRS014923_WUGC_scaffold_17878 strand: - 3357-3428 ref: 3354-3466
Variable:  SRS014923_WUGC_scaffold_17878 strand: - 42091-42162 alnlen 71 mutations 9 involve-A 9 involve-T 0

3428       AATGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCT (revcomp)
           :::::::::::::::: :::: :::::: :::: :::::::: :::::: ::::  ::::::::::: :::
42162      AATGCCGGGCTTTCGTGCGCGTATACGATTAACGCGGCTACGTATACGACTGCGTCTATCGGCTCTCGGCT (revcomp)
Template:  SRS014923_WUGC_scaffold_17878 strand: - 3357-3426 ref: 3354-3466
Variable:  SRS014923_WUGC_scaffold_17878 strand: - 39101-39170 alnlen 69 mutations 11 involve-A 11 involve-T 0

3426       TGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCT (revcomp)
           :::::::::::::: :::: ::::: ::: : :::::::: :: :: :::::  ::::::::::: :::
39170      TGCCGGGCTTTCGTGCGCGCATACGCATAGCGCGGCTACGCATTCGTATGCGTCTATCGGCTCTCGGCT (revcomp)