Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS015217_WUGC_scaffold_19551 strand: + 40841-40951 ref: 40841-40951

Variable:  SRS015217_WUGC_scaffold_19551 strand: + 40138-40248 alnlen 110 mutations 10 involve-A 10 involve-T 0

GCCTATCCGGGGTTCGAGTTTCAACAACACTTCCAACGGTGGTGCTGGTGCGCTGAACTTGAACAACCCCCGTTCTAACGTCAACAACAACGTTTCGTTCCGTTCCGCTT (Template)
GCCTCTCCGGGGTTCGAGTTTCTACAGCACTTCCAGCGGTGGTGCTGGTGCGCTGCACTTGGACAACCCCCGTTCTTTCGTCAACGACATCGTTTCGTTCCGTTCCGCTT (Variable)
Template:  SRS015217_WUGC_scaffold_19551 strand: + 40841-40951 ref: 40841-40951

Variable:  SRS015217_WUGC_scaffold_19551 strand: + 4554-4664 alnlen 110 mutations 11 involve-A 11 involve-T 0

GCCTATCCGGGGTTCGAGTTTCAACAACACTTCCAACGGTGGTGCTGGTGCGCTGAACTTGAACAACCCCCGTTCTAACGTCAACAACAACGTTTCGTTCCGTTCCGCTT (Template)
GCCTCTCCGGGGTTCGAGTTTCCACCACACTTCCCACGGTGGTGCTGGTGCGCTGGGCTTGGACTACCCCCGTTCTAACGTCTACTTCAACGTTTCGTTCCGTTCCGCTT (Variable)