Template:  SRS016095_WUGC_scaffold_20077 strand: - 46342-46501 ref: 46341-46502
Variable:  SRS016095_WUGC_scaffold_20077 strand: - 47736-47895 alnlen 159 mutations 18 involve-A 18 involve-T 0

46501      ACAATAACGGGCAGTTGAACAACGTGGGCAACAACGGCAACTATTGGTCGGGCTCGCCGAACGGTACGAACGGGTATAACCTGAACTTCAACAATGGTAACGTGAACCCGGCGAACAACAACAACCGCTCGAACGGCTTCTCCGTGAGGTGTGTTGCAG (revcomp)
           :::::::::::::::::: ::::::::::  : ::::: :::::::::::::::::::: ::::::::  ::::: : :::::  :::: :::::::: ::::: ::::::::: :::: ::::::::::: :::::::::::::::::::::::::::
47895      ACAATAACGGGCAGTTGAGCAACGTGGGCCTCTACGGCTACTATTGGTCGGGCTCGCCGTACGGTACGTTCGGGTCTTACCTGTGCTTCGACAATGGTTACGTGTACCCGGCGAGCAACTACAACCGCTCGTACGGCTTCTCCGTGAGGTGTGTTGCAG (revcomp)
Template:  SRS016095_WUGC_scaffold_20077 strand: - 46404-46496 ref: 46341-46502
Variable:  SRS016095_WUGC_scaffold_20077 strand: - 50825-50917 alnlen 92 mutations 20 involve-A 11 involve-T 1

46496      AACGGGCAGTTGAACAACGTGGGCAACAACGGCAACTATTGGTCGGGCTCGCCGAACGGTACGAACGGGTATAACCTGAACTTCAACAATGG (revcomp)
           :: ::::::::: ::::::::::: :: ::::: ::::::::::::: :: :: ::: :::  : ::::::   : :: :::::  :: :::
50917      AATGGGCAGTTGTACAACGTGGGCTACTACGGCTACTATTGGTCGGGGTCTCCTAACAGTATAAGCGGGTACTCCTTGTACTTCCTCAGTGG (revcomp)