Template:  SRS016335_WUGC_scaffold_42665 strand: - 4150-4264 ref: 4151-4265
Variable:  SRS016335_WUGC_scaffold_42665 strand: - 4352-4466 alnlen 114 mutations 15 involve-A 13 involve-T 2

4264       TGGTGCCCTTTTGTCTGCTAATGCGAATAATGGTGCGAATGCGGGTTTCGGTTATCTGAATGCGAATAATCGTTCCTCGAATGCGAATGCGAACATTGGGTTCCGCTTTTACCG (revcomp)
           :::::::::::::::::::  :::::::  :::::::: ::::::::::::::::::: ::::::   ::::::::::: ::::: ::::: :: ::::::::::::: : :::
4466       TGGTGCCCTTTTGTCTGCTGGTGCGAATGCTGGTGCGACTGCGGGTTTCGGTTATCTGTATGCGAGGCATCGTTCCTCGCATGCGCATGCGTACTTTGGGTTCCGCTTGTGCCG (revcomp)
Template:  SRS016335_WUGC_scaffold_42665 strand: - 4151-4263 ref: 4151-4265
Variable:  SRS016335_WUGC_scaffold_42665 strand: - 46793-46905 alnlen 112 mutations 15 involve-A 14 involve-T 1

4263       GGTGCCCTTTTGTCTGCTAATGCGAATAATGGTGCGAATGCGGGTTTCGGTTATCTGAATGCGAATAATCGTTCCTCGAATGCGAATGCGAACATTGGGTTCCGCTTTTACC (revcomp)
           ::::::::::::::::::  ::::  : ::::::::  :::::::::::::::::::::::::: :  ::::::::::  :::::::::: :::::::::::::::: : ::
46905      GGTGCCCTTTTGTCTGCTGCTGCGGCTTATGGTGCGTCTGCGGGTTTCGGTTATCTGAATGCGATTGTTCGTTCCTCGGCTGCGAATGCGTACATTGGGTTCCGCTTGTGCC (revcomp)