Template:  SRS017307_Baylor_scaffold_30143 strand: + 3048-3164 ref: 3048-3164
Variable:  SRS017307_Baylor_scaffold_30143 strand: + 2435-2551 alnlen 116 mutations 18 involve-A 18 involve-T 0

3048       TGGTGTCCTGTTCAGCGGTAACGCGAATAACAGTGCGAATGCAGGTCTCGCCTATGCGAACTCGAATAACACCCCCTCGAATACGAATGCGAACATCGGTTCTCACCTATGCTTTA 
           ::::::::::::: :::::  ::::::: :: :::::: ::: :::::::::: :::: ::::: :: :: ::::::::::: ::: :::: :: ::::::::: ::: :::::::
2435       TGGTGTCCTGTTCGGCGGTCGCGCGAATTACGGTGCGAGTGCGGGTCTCGCCTGTGCGTACTCGCATTACGCCCCCTCGAATGCGAGTGCGTACTTCGGTTCTCGCCTTTGCTTTA