Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS017521_Baylor_scaffold_45782 strand: - 22638-22787 ref: 22637-22787

Variable:  SRS017521_Baylor_scaffold_45782 strand: - 24031-24180 alnlen 149 mutations 21 involve-A 21 involve-T 0

GCAGTTGAACAACGTGGGCAACAACGGCAACTATTGGTCGGGCTCGCCGAACGGTACGAACGGGTATAACCTGAACTTCAACAATGGTAACGTGAACCCGGCGAACAACAACAACCGCTCGAACGGCTTCTCCGTGAGGTGTGTTGCAG (Template)
GCAGTTGTACGCCGTGGGCTTCTACGGCTACTATTGGTCGGGCTCGCCGAACGGTTCGCGCGGGTATTCCCTGTTCTTCGGCAATGGTAACGTGAACCCGGCGTACAGCGACAACCGCTCGCTCGGCTTCTCCGTGAGGTGTGTTGCAG (Variable)
Template:  SRS017521_Baylor_scaffold_45782 strand: - 22700-22787 ref: 22637-22787

Variable:  SRS017521_Baylor_scaffold_45782 strand: - 27120-27207 alnlen 87 mutations 19 involve-A 11 involve-T 1

GCAGTTGAACAACGTGGGCAACAACGGCAACTATTGGTCGGGCTCGCCGAACGGTACGAACGGGTATAACCTGAACTTCAACAATGG (Template)
GCAGTTGTACAACGTGGGCTACTACGGCTACTATTGGTCGGGGTCTCCTAACAGTATAAGCGGGTACTCCTTGTACTTCCTCAGTGG (Variable)