Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS017701_Baylor_scaffold_11281 strand: + 46753-46865 ref: 46753-46865

Variable:  SRS017701_Baylor_scaffold_11281 strand: + 46208-46320 alnlen 112 mutations 18 involve-A 18 involve-T 0

GGTGTCTTGTTCGGCGGTAATGCGAATAACAGCGCGAATGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT (Template)
GGTGTCTTGTTCGGCGGTTTTGCGGCTAACGGCGCGCTTGCCGGGCTTTCGTGCGCGTATACGTCTAACACGGCTACGCATTCGAATGCGCGTATCGGCTCTCGGCTTTGCT (Variable)
Template:  SRS017701_Baylor_scaffold_11281 strand: + 46791-46865 ref: 46753-46865

Variable:  SRS017701_Baylor_scaffold_11281 strand: + 11155-11229 alnlen 74 mutations 10 involve-A 10 involve-T 0

TGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT (Template)
TGCCGGGCTTTCGTGCGCGGCTACGAATAACGCGGCTACGTCTACGCATGCGAATATCGGCTCTCGGCTTTGCT (Variable)
Template:  SRS017701_Baylor_scaffold_11281 strand: + 46789-46865 ref: 46753-46865

Variable:  SRS017701_Baylor_scaffold_11281 strand: + 8225-8301 alnlen 76 mutations 13 involve-A 13 involve-T 0

AATGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT (Template)
AATGCCGGGCTTTCGTGCGCGTTTACGTATACCGCGGCTACGTATACGTATGCGTATTTCGGCTCTCGGCTTTGCT (Variable)