Template:  SRS017821_Baylor_scaffold_3398 strand: + 700-815 ref: 700-815
Variable:  SRS017821_Baylor_scaffold_3398 strand: + 152-267 alnlen 115 mutations 21 involve-A 20 involve-T 1

700        CGGTGTCCTGTTCAGCGGTAATGCGAATAACAGCTCGAATGCCGGTTTTGCGTATGCGAATTCGAATAACACGCCCTCGAATACGAATGCGAATATCAGGTCTCGCCAATGATTT 
           ::: ::::::::: ::::: ::::: ::::: ::::::::::::::::::::: :::: :::::  :  :::::::::: :::::  ::::  : :: :::::::::  :: :::
152        CGGCGTCCTGTTCGGCGGTCATGCGTATAACGGCTCGAATGCCGGTTTTGCGTCTGCGCATTCGGCTTGCACGCCCTCGTATACGTCTGCGGCTGTCGGGTCTCGCCTTTGCTTT