Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS018817_WUGC_scaffold_11409 strand: - 8856-8970 ref: 8857-8971

Variable:  SRS018817_WUGC_scaffold_11409 strand: - 9054-9168 alnlen 114 mutations 20 involve-A 19 involve-T 1

GGGTGTCCTTTTCAGCGGTAATACGAATAATGGCGATCATGCAGGCTTCGGTTATGCGAATACGAATAACACCCCCTCGAATACGAATGCGAATGTCAGCTCTCAGCTATGATT (Template)
GGGTGTCCTTTTCGGCGGTGATACGTATGATGGCGATCGTGCGGGCTTCGGTTATGCGGCTACGCATGACGCCCCCTCGCATACGTCTGCGAGGGTCGGCTCTCGGCTTTGTTT (Variable)