Template:  SRS019161_WUGC_scaffold_35145 strand: + 47109-47221 ref: 47109-47221
Variable:  SRS019161_WUGC_scaffold_35145 strand: + 46567-46679 alnlen 112 mutations 17 involve-A 16 involve-T 1

47109      GGTGTCTTGTTCGGCGGTAATGCGAATAACAGCGCGAATGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT 
           ::::::::::::::::::  :::: ::::: ::::::::::::::::::::: ::::  ::::::: :: :::: :::  ::::: :::: :::::::::::: ::: : ::
46567      GGTGTCTTGTTCGGCGGTTCTGCGCATAACGGCGCGAATGCCGGGCTTTCGTGCGCGCTTACGAATTACGCGGCGACGTCTACGAGTGCGTATATCGGCTCTCGGCTTTGCT 
Template:  SRS019161_WUGC_scaffold_35145 strand: + 47147-47221 ref: 47109-47221
Variable:  SRS019161_WUGC_scaffold_35145 strand: + 11406-11480 alnlen 74 mutations 8 involve-A 8 involve-T 0

47147      TGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT 
           ::::::::::::::::::: :: :: ::::: ::::: ::::::::::::::: ::::::::::::::: : ::
11406      TGCCGGGCTTTCGTACGCGGATGCGTATAACGCGGCTGCGAATACGAATGCGACTATCGGCTCTCAGCTTTGCT 
Template:  SRS019161_WUGC_scaffold_35145 strand: + 47145-47221 ref: 47109-47221
Variable:  SRS019161_WUGC_scaffold_35145 strand: + 8476-8552 alnlen 76 mutations 10 involve-A 10 involve-T 0

47145      AATGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT 
           :::::::::::::::: :::: ::::::::::: ::::: ::: ::::: :::: :::::::::::: ::: : ::
8476       AATGCCGGGCTTTCGTGCGCGTATACGAATAACGCGGCTCCGACTACGACTGCGCATATCGGCTCTCGGCTTTGCT