Template:  SRS019582_WUGC_scaffold_9518 strand: - 4342-4500 ref: 4341-4500
Variable:  SRS019582_WUGC_scaffold_9518 strand: - 5786-5944 alnlen 158 mutations 16 involve-A 16 involve-T 0

4500       CGACGGTAGCATGAGCAACGTGGGCAGCAACGGCAACTATTGGAGTGCATCGCCGAACAGCGAGAATAACGGTTACAACTTGAACTTCAACAGTGGCAACGTGAATCCTGCGAACAACAACAATCGAGCAAACGGTTTCTCCGTGCGCTGTGTCCAAG (revcomp)
           ::::::: ::::::::: :::::::::::::::: ::: ::::::::: ::::::::::::::::::  ::::::: ::::: ::::: ::::::::: :::: ::::::::: : :::::::::::::  :::::::::::::::::::::::::::
5944       CGACGGTGGCATGAGCAGCGTGGGCAGCAACGGCTACTGTTGGAGTGCGTCGCCGAACAGCGAGAATTTCGGTTACTACTTGTACTTCCACAGTGGCAGCGTGTATCCTGCGAGCTACAACAATCGAGCGTACGGTTTCTCCGTGCGCTGTGTCCAAG (revcomp)
Template:  SRS019582_WUGC_scaffold_9518 strand: - 4381-4500 ref: 4341-4500
Variable:  SRS019582_WUGC_scaffold_9518 strand: - 5981-6100 alnlen 119 mutations 10 involve-A 9 involve-T 1

4500       CGACGGTAGCATGAGCAACGTGGGCAGCAACGGCAACTATTGGAGTGCATCGCCGAACAGCGAGAATAACGGTTACAACTTGAACTTCAACAGTGGCAACGTGAATCCTGCGAACAACA (revcomp)
           ::::::::::::::::::::::::::::  ::::::::::::::::::: :::::: :::::::::::::::::::: :::: :::::: ::::::: :::::: ::::::: ::::::
6100       CGACGGTAGCATGAGCAACGTGGGCAGCGGCGGCAACTATTGGAGTGCAGCGCCGAGCAGCGAGAATAACGGTTACAGCTTGTACTTCAGCAGTGGCTACGTGAGTCCTGCGTACAACA (revcomp)