Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS022609_Baylor_scaffold_37769 strand: + 33103-33224 ref: 33103-33224

Variable:  SRS022609_Baylor_scaffold_37769 strand: + 32730-32851 alnlen 121 mutations 19 involve-A 18 involve-T 1

TTTGCGCGTTCAGGCTGCTGGCGGTAACGTGAACAATGGCACGAACGCAGGTGCGTCCAACTCGACTGCGAACAACGCAGCTTCGACTACGAATGCGAACTACTCGTCGCCCCTATACTTT (Template)
TTTGCGCGTTCGGGCTGCTGGCGGCATCGTGCTCAGTGGCACGTACGCGGGTGCGTCCTGCTCGACTGCGGACGGCGCGGCTTCGACTACGCATGCGGACTGCTCGTCGCCCCTCTGCTTT (Variable)