Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS022609_Baylor_scaffold_55782 strand: + 31820-31928 ref: 31820-31928

Variable:  SRS022609_Baylor_scaffold_55782 strand: + 31258-31366 alnlen 108 mutations 9 involve-A 9 involve-T 0

CTCTTGTCGGCGGTAATTGGGGCAATACTACTCAAGCTGGGTTGTGGTATTGGAACTTCAATTGGTCTGGGACTGATTACAACACTAATGTCGGTGCTCGACTACTTA (Template)
CTCTTGTCGGCGGTAGTTGGGGCAATACTACTCGGGCTGGGTTGTGGTATTGGCACTTCAGTTGGTCTGGGACTGATTGCGACACTACTGTCGGTGCTCGACTTCTTA (Variable)