Template: SRS023346_LANL_scaffold_1239 strand: - 19193-19312 ref: 19188-19313 Variable: SRS023346_LANL_scaffold_1239 strand: - 19964-20083 alnlen 119 mutations 18 involve-A 17 involve-T 0 19312 GGTACTGGAGTAGCAGTGAGAACAGTCAGAACAACAGCTGGAACGTGAACTTTAGTAATGGCAACTTCAACAACAACAACAAGTACAACAGTAACATGGTGAGAGCGGTTGCAGCACTT (revcomp) :::::::::::::::::::: :::::::: :: :::::::: ::::: ::::::::::::::::::: : :: :: ::::: : :::: :::::::::::::::::::::: :: 20083 GGTACTGGAGTAGCAGTGAGGACAGTCAGTACGGCAGCTGGAGCGTGAGCTTTAGTAATGGCAACTTCGGCTACGGCAGCAAGTGCGGCAGTGGCATGGTGAGAGCGGTTGCAGCATTT (revcomp) Template: SRS023346_LANL_scaffold_1239 strand: - 19193-19307 ref: 19188-19313 Variable: SRS023346_LANL_scaffold_1239 strand: + 72704-72818 alnlen 114 mutations 20 involve-A 19 involve-T 0 (on different strand) 19307 TGGAGTAGCAGTGAGAACAGTCAGAACAACAGCTGGAACGTGAACTTTAGTAATGGCAACTTCAACAACAACAACAAGTACAACAGTAACATGGTGAGAGCGGTTGCAGCACTT (revcomp) :::::::::::::::: ::::::: :: ::::::: :::: ::::::: :::::::::: ::::: :: ::::: : ::::: : :::::::::::::::::::: :: 72704 TGGAGTAGCAGTGAGAGCAGTCAGGTCAGCAGCTGGGGCGTGGGCTTTAGTGGTGGCAACTTCGGCAACAGCAGCAAGTCCTACAGTGTCGTGGTGAGAGCGGTTGCAGCATTT