Template:  SRS023346_LANL_scaffold_1239 strand: - 19193-19312 ref: 19188-19313
Variable:  SRS023346_LANL_scaffold_1239 strand: - 19964-20083 alnlen 119 mutations 18 involve-A 17 involve-T 0

19312      GGTACTGGAGTAGCAGTGAGAACAGTCAGAACAACAGCTGGAACGTGAACTTTAGTAATGGCAACTTCAACAACAACAACAAGTACAACAGTAACATGGTGAGAGCGGTTGCAGCACTT (revcomp)
           :::::::::::::::::::: :::::::: ::  :::::::: ::::: :::::::::::::::::::  : ::  :: ::::: :  ::::  :::::::::::::::::::::: ::
20083      GGTACTGGAGTAGCAGTGAGGACAGTCAGTACGGCAGCTGGAGCGTGAGCTTTAGTAATGGCAACTTCGGCTACGGCAGCAAGTGCGGCAGTGGCATGGTGAGAGCGGTTGCAGCATTT (revcomp)
Template:  SRS023346_LANL_scaffold_1239 strand: - 19193-19307 ref: 19188-19313
Variable:  SRS023346_LANL_scaffold_1239 strand: + 72704-72818 alnlen 114 mutations 20 involve-A 19 involve-T 0
(on different strand)
19307      TGGAGTAGCAGTGAGAACAGTCAGAACAACAGCTGGAACGTGAACTTTAGTAATGGCAACTTCAACAACAACAACAAGTACAACAGTAACATGGTGAGAGCGGTTGCAGCACTT (revcomp)
           :::::::::::::::: :::::::  :: :::::::  ::::  :::::::  ::::::::::  ::::: :: ::::: : :::::  : :::::::::::::::::::: ::
72704      TGGAGTAGCAGTGAGAGCAGTCAGGTCAGCAGCTGGGGCGTGGGCTTTAGTGGTGGCAACTTCGGCAACAGCAGCAAGTCCTACAGTGTCGTGGTGAGAGCGGTTGCAGCATTT