Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS023346_LANL_scaffold_1239 strand: - 19193-19312 ref: 19188-19313

Variable:  SRS023346_LANL_scaffold_1239 strand: - 19964-20083 alnlen 119 mutations 18 involve-A 17 involve-T 0

GGTACTGGAGTAGCAGTGAGAACAGTCAGAACAACAGCTGGAACGTGAACTTTAGTAATGGCAACTTCAACAACAACAACAAGTACAACAGTAACATGGTGAGAGCGGTTGCAGCACTT (Template)
GGTACTGGAGTAGCAGTGAGGACAGTCAGTACGGCAGCTGGAGCGTGAGCTTTAGTAATGGCAACTTCGGCTACGGCAGCAAGTGCGGCAGTGGCATGGTGAGAGCGGTTGCAGCATTT (Variable)
Template:  SRS023346_LANL_scaffold_1239 strand: - 19193-19307 ref: 19188-19313

Variable:  SRS023346_LANL_scaffold_1239 strand: + 72704-72818 alnlen 114 mutations 20 involve-A 19 involve-T 0

TGGAGTAGCAGTGAGAACAGTCAGAACAACAGCTGGAACGTGAACTTTAGTAATGGCAACTTCAACAACAACAACAAGTACAACAGTAACATGGTGAGAGCGGTTGCAGCACTT (Template)
TGGAGTAGCAGTGAGAGCAGTCAGGTCAGCAGCTGGGGCGTGGGCTTTAGTGGTGGCAACTTCGGCAACAGCAGCAAGTCCTACAGTGTCGTGGTGAGAGCGGTTGCAGCATTT (Variable)