Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS023914_Baylor_scaffold_3863 strand: + 62541-62661 ref: 62541-62661

Variable:  SRS023914_Baylor_scaffold_3863 strand: + 62140-62260 alnlen 120 mutations 15 involve-A 14 involve-T 1

CCTTCGTGTCCGCGCGGCTGGCGGTAACGCTAACAATGGTGCGAATGCAGGTGCGTTCTACGTGAATGCGAACTATGCGGCTTCGAATGCGAATGCGAACTACTCGTCGCCCCTATACTT (Template)
CCTTCGTGTCCGCGCGGCTGGCGGTCACGCTCACCTTGGTGCGACTGCGGGTGCGTTCTACGTGCGTGCGAACTCGGCGGCTTCGAATGCGGATGCGCACTGCTCGTCGCCCCTCTGCTT (Variable)