Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS024075_LANL_scaffold_1103 strand: + 12492-12565 ref: 12492-12565

Variable:  SRS024075_LANL_scaffold_1103 strand: + 11983-12056 alnlen 73 mutations 10 involve-A 7 involve-T 1

CGTTGTTCTTCCGTCCGGCAACATCAACAACAACAATTGCAACAACAGCAACGGTGTTCGCCCATTCTGTGTC (Template)
CGTTGTTCTTCCGTCCGGCAACTTCAACAACTACAATTGCAGCGGCAGCCACGGTGTTCGCCCGGTTTGTATC (Variable)
Template:  SRS024075_LANL_scaffold_1103 strand: + 12492-12565 ref: 12492-12565

Variable:  SRS024075_LANL_scaffold_1103 strand: + 11298-11371 alnlen 73 mutations 13 involve-A 10 involve-T 1

CGTTGTTCTTCCGTCCGGCAACATCAACAACAACAATTGCAACAACAGCAACGGTGTTCGCCCATTCTGTGTC (Template)
CGTTGTTCTTCCGTCCGGCTACATCGGCAACTACAGTTGCGGCTACAGCTTCGGTGTTCGCCCAGTTTGTATC (Variable)