Template:  SRS024075_LANL_scaffold_22810 strand: + 1462-1589 ref: 1462-1589
Variable:  SRS024075_LANL_scaffold_22810 strand: + 729-856 alnlen 127 mutations 17 involve-A 17 involve-T 0

1462       ACTGGTCCTCCTCGGAGTTCTACAACAATCCGGCGAACAACGCTCTTTATGTGAATGTGAACAACGGCAACGTGAACAACAACAATAAGAACAACAGAAATAGTTACGTGCGTCCGGTCTTGGCTTT 
           ::::::::::::::::::::: : ::  :::::::: :  :::::::::::::: ::::: :  :::::::::: ::::: ::: :::: :: :::: :::::::::::::::::::::::::::::
729        ACTGGTCCTCCTCGGAGTTCTGCGACCTTCCGGCGAGCGGCGCTCTTTATGTGAGTGTGAGCGGCGGCAACGTGTACAACTACAGTAAGGACGACAGGAATAGTTACGTGCGTCCGGTCTTGGCTTT