Template:  SRS024132_Baylor_scaffold_18469 strand: + 12354-12426 ref: 12354-12426
Variable:  SRS024132_Baylor_scaffold_18469 strand: + 11845-11917 alnlen 72 mutations 9 involve-A 7 involve-T 1

12354      CGTTGTTTCGCCGGTTGGCGACATCAACAACAGGAACTACAATAACAGCAACGGTGTTCGCCCATTCTGTAT 
           :::::::::::::::::::: :::::::  : ::::::::  :::::::: ::::::::::::: : :::::
11845      CGTTGTTTCGCCGGTTGGCGGCATCAACTTCGGGAACTACGTTAACAGCATCGGTGTTCGCCCAGTTTGTAT 
Template:  SRS024132_Baylor_scaffold_18469 strand: + 12354-12417 ref: 12354-12426
Variable:  SRS024132_Baylor_scaffold_18469 strand: + 11223-11286 alnlen 63 mutations 9 involve-A 9 involve-T 0

12354      CGTTGTTTCGCCGGTTGGCGACATCAACAACAGGAACTACAATAACAGCAACGGTGTTCGCCC 
           :::::::::::::::::::: :::: :: :: ::  :::: ::  ::::::::::::::::::
11223      CGTTGTTTCGCCGGTTGGCGGCATCTACGACTGGTTCTACTATGGCAGCAACGGTGTTCGCCC