Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS024132_Baylor_scaffold_18469 strand: + 12354-12426 ref: 12354-12426

Variable:  SRS024132_Baylor_scaffold_18469 strand: + 11845-11917 alnlen 72 mutations 9 involve-A 7 involve-T 1

CGTTGTTTCGCCGGTTGGCGACATCAACAACAGGAACTACAATAACAGCAACGGTGTTCGCCCATTCTGTAT (Template)
CGTTGTTTCGCCGGTTGGCGGCATCAACTTCGGGAACTACGTTAACAGCATCGGTGTTCGCCCAGTTTGTAT (Variable)
Template:  SRS024132_Baylor_scaffold_18469 strand: + 12354-12417 ref: 12354-12426

Variable:  SRS024132_Baylor_scaffold_18469 strand: + 11223-11286 alnlen 63 mutations 9 involve-A 9 involve-T 0

CGTTGTTTCGCCGGTTGGCGACATCAACAACAGGAACTACAATAACAGCAACGGTGTTCGCCC (Template)
CGTTGTTTCGCCGGTTGGCGGCATCTACGACTGGTTCTACTATGGCAGCAACGGTGTTCGCCC (Variable)