Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS024265_LANL_scaffold_29936 strand: + 2501-2615 ref: 2501-2615

Variable:  SRS024265_LANL_scaffold_29936 strand: + 2299-2413 alnlen 114 mutations 16 involve-A 15 involve-T 1

GGTGCCCTTTTGTCTGCTAATGCGAATAATGGTGCGAATGCGGGTTTCGGTTATCTGAATGCGAATAATCGTTCCTCGAATGCGAATGCGAACATTGGGTTCCGCTTTTACCGT (Template)
GGTGCCCTTTTGTCTGCTCATGCGGGTTCTGGTGCGAATGCGGGTTTCGGTTGTCTGCTTGCGGGTACTCGTTCCTCGATTGCGAATGCGCACGTTGGGTTCCGCTTGTGCCGT (Variable)