Template: SRS024435_LANL_scaffold_1610 strand: + 1543-1655 ref: 1543-1655 Variable: SRS024435_LANL_scaffold_1610 strand: + 998-1110 alnlen 112 mutations 23 involve-A 22 involve-T 0 1543 GGTGTCTTGTTCGGCGGTAATGCGAATAACAGCGCGAATGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT :::::::::::::::::: :::: : :: ::::: :::::::::::::: :::: :::::: : :: ::::: :: :::: ::::: ::::::::::: : : : :: 998 GGTGTCTTGTTCGGCGGTGGTGCGCTTTACGGCGCGTCTGCCGGGCTTTCGTGCGCGTATACGACTTACGCGGCTGCGCTTACGTATGCGGCTATCGGCTCTCGGATTTGCT