Template:  SRS024435_LANL_scaffold_1610 strand: + 1543-1655 ref: 1543-1655
Variable:  SRS024435_LANL_scaffold_1610 strand: + 998-1110 alnlen 112 mutations 23 involve-A 22 involve-T 0

1543       GGTGTCTTGTTCGGCGGTAATGCGAATAACAGCGCGAATGCCGGGCTTTCGTACGCGAATACGAATAACACGGCTACGAATACGAATGCGAATATCGGCTCTCAGCTATACT 
           ::::::::::::::::::  ::::  : :: :::::  :::::::::::::: :::: :::::: : :: ::::: ::  :::: :::::  ::::::::::: : : : ::
998        GGTGTCTTGTTCGGCGGTGGTGCGCTTTACGGCGCGTCTGCCGGGCTTTCGTGCGCGTATACGACTTACGCGGCTGCGCTTACGTATGCGGCTATCGGCTCTCGGATTTGCT