Template: SRS024435_LANL_scaffold_33569 strand: + 3048-3164 ref: 3048-3164 Variable: SRS024435_LANL_scaffold_33569 strand: + 2435-2551 alnlen 116 mutations 16 involve-A 16 involve-T 0 3048 TGGTGTCCTGTTCAGCGGTAACGCGAATAACAGTGCGAATGCAGGTCTCGCCTATGCGAACTCGAATAACACCCCCTCGAATACGAATGCGAACATCGGTTCTCACCTATGCTTTA ::::::::::::: :::::: :::::::::: ::::: :::: ::::::::::::::: ::::: : :: :::::::::::::: ::::: : ::::::::: ::: ::::::: 2435 TGGTGTCCTGTTCGGCGGTAGCGCGAATAACGGTGCGCATGCGGGTCTCGCCTATGCGCACTCGTCTGACGCCCCCTCGAATACGCTTGCGAGCCTCGGTTCTCGCCTTTGCTTTA