Template:  SRS024549_LANL_scaffold_4925 strand: - 1654-1768 ref: 1655-1769
Variable:  SRS024549_LANL_scaffold_4925 strand: - 1852-1966 alnlen 114 mutations 20 involve-A 20 involve-T 0

1768       GGGTGTCCTTTTCAGCGGTAATACGAATAATGGCGATCATGCAGGCTTCGGTTATGCGAATACGAATAACACCCCCTCGAATACGAATGCGAATGTCAGCTCTCAGCTATGATT (revcomp)
           ::::::::::::: :::::: :::: :: :::::: :: ::: :::::::::: :::: :::::  : :: :::::::::::::: :::::  :::: :::::: ::: :: ::
1966       GGGTGTCCTTTTCGGCGGTATTACGTATCATGGCGTTCGTGCGGGCTTCGGTTTTGCGTATACGGCTGACGCCCCCTCGAATACGCATGCGCTTGTCGGCTCTCGGCTTTGTTT (revcomp)
Template:  SRS024549_LANL_scaffold_4925 strand: - 1657-1733 ref: 1655-1769
Variable:  SRS024549_LANL_scaffold_4925 strand: - 39479-39555 alnlen 76 mutations 10 involve-A 10 involve-T 0

1733       ATCATGCAGGCTTCGGTTATGCGAATACGAATAACACCCCCTCGAATACGAATGCGAATGTCAGCTCTCAGCTATG (revcomp)
           ::: ::: :::::::::::::::::::::::: :: ::::::::: :::: :::::: :::: :::::: ::: ::
39555      ATCGTGCGGGCTTCGGTTATGCGAATACGAATGACGCCCCCTCGACTACGGATGCGACTGTCGGCTCTCGGCTTTG (revcomp)