Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS024549_LANL_scaffold_4925 strand: - 1654-1768 ref: 1655-1769

Variable:  SRS024549_LANL_scaffold_4925 strand: - 1852-1966 alnlen 114 mutations 20 involve-A 20 involve-T 0

GGGTGTCCTTTTCAGCGGTAATACGAATAATGGCGATCATGCAGGCTTCGGTTATGCGAATACGAATAACACCCCCTCGAATACGAATGCGAATGTCAGCTCTCAGCTATGATT (Template)
GGGTGTCCTTTTCGGCGGTATTACGTATCATGGCGTTCGTGCGGGCTTCGGTTTTGCGTATACGGCTGACGCCCCCTCGAATACGCATGCGCTTGTCGGCTCTCGGCTTTGTTT (Variable)
Template:  SRS024549_LANL_scaffold_4925 strand: - 1657-1733 ref: 1655-1769

Variable:  SRS024549_LANL_scaffold_4925 strand: - 39479-39555 alnlen 76 mutations 10 involve-A 10 involve-T 0

ATCATGCAGGCTTCGGTTATGCGAATACGAATAACACCCCCTCGAATACGAATGCGAATGTCAGCTCTCAGCTATG (Template)
ATCGTGCGGGCTTCGGTTATGCGAATACGAATGACGCCCCCTCGACTACGGATGCGACTGTCGGCTCTCGGCTTTG (Variable)