Template:  SRS024625_LANL_scaffold_16620 strand: + 1145-1336 ref: 1145-1336
Variable:  SRS024625_LANL_scaffold_16620 strand: + 568-759 alnlen 191 mutations 10 involve-A 10 involve-T 0

1145       CCGGCAGCCGGCTATCGCAACGGGTATGACGGCCACGTCAACAACGTTGGGTGGGGGTGCTACGCTTGGTCGGCCTCTCCGTACTCTGCCACGTCGCAGAACGGGGGCTTCCTGAACACGAACTCGAGCTGGGTGAACCCGGTGAACAACACCAACCGTTCGAATGCGTTCCCTGTGCGTTGTGTCCGAGA 
           ::::::::::::::::::: :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::  ::::  ::::::::::::: ::::::::::: ::::::::::::::: :::::::::::::::::::::::::::
568        CCGGCAGCCGGCTATCGCAGCGGGTATGACGGCCACGTCAGCAACGTTGGGTGGGGGTGCTACGCTTGGTCGGCCTCTCCGTACTCTGCCACGTCGCAGTACGGGGGCTTCCTGGGCACGGGCTCGAGCTGGGTGTACCCGGTGAACTACACCAACCGTTCGAGTGCGTTCCCTGTGCGTTGTGTCCGAGA