Template: SRS043411_WUGC_scaffold_28490 strand: + 1527-1605 ref: 1527-1605 Variable: SRS043411_WUGC_scaffold_28490 strand: + 1288-1366 alnlen 78 mutations 16 involve-A 15 involve-T 0 1527 GCAGCAGCTTCTATTGGAATCTGAATAATGCTTCTTCTAATCGCAATCGGAATATCAGCAGGCAGTTAGTAAATGCAC :: :: :::::: :::: ::::: :: ::::::::::: :::: ::::::::::: :: ::: ::: :: ::: :: 1288 GCGGCGGCTTCTGTTGGTATCTGGATGATGCTTCTTCTGGTCGCTATCGGAATATCGGCGGGCGGTTGGTGTATGTAC