Template:  SRS043411_WUGC_scaffold_28490 strand: + 1527-1605 ref: 1527-1605
Variable:  SRS043411_WUGC_scaffold_28490 strand: + 1288-1366 alnlen 78 mutations 16 involve-A 15 involve-T 0

1527       GCAGCAGCTTCTATTGGAATCTGAATAATGCTTCTTCTAATCGCAATCGGAATATCAGCAGGCAGTTAGTAAATGCAC 
           :: :: :::::: :::: ::::: :: :::::::::::  :::: ::::::::::: :: ::: ::: ::  ::: ::
1288       GCGGCGGCTTCTGTTGGTATCTGGATGATGCTTCTTCTGGTCGCTATCGGAATATCGGCGGGCGGTTGGTGTATGTAC