Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS043411_WUGC_scaffold_28831 strand: - 12128-12237 ref: 12128-12244

Variable:  SRS043411_WUGC_scaffold_28831 strand: - 50698-50807 alnlen 109 mutations 6 involve-A 5 involve-T 0

CTGATTCGCGGTGGCAACTGGAACAATGGCGGCAACGCCGGGGTGTTCAATTCCAACCTGAACAACCCGCGCTCCAATGCCAACGGCAACATCGGGGGCCGTTCCGCTT (Template)
CTGATTCGCGGTGGCAACTGGAACAATGGCGGCCACGCCGGGGTGTTCGATTCCAGCCTGATCAACCCGCGCTCAAATGCCAACGGCAACGTCGGGGGCCGTTCCGCTT (Variable)
Template:  SRS043411_WUGC_scaffold_28831 strand: - 12127-12243 ref: 12128-12244

Variable:  SRS043411_WUGC_scaffold_28831 strand: - 12848-12964 alnlen 116 mutations 11 involve-A 11 involve-T 0

CGGTGCCTGATTCGCGGTGGCAACTGGAACAATGGCGGCAACGCCGGGGTGTTCAATTCCAACCTGAACAACCCGCGCTCCAATGCCAACGGCAACATCGGGGGCCGTTCCGCTTT (Template)
CGGTGCCTGATTCGCGGTGGCCACTGGGTCAATGGCGGCGGCGCCGGGGTGTTCGATTCCTACCTGAGCAACCCGCGCTCCAATGCCAGCGGCATCCTCGGGGGCCGTTCCGCTTT (Variable)