Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS043701_LANL_scaffold_20843 strand: + 49153-49274 ref: 49153-49274

Variable:  SRS043701_LANL_scaffold_20843 strand: + 48785-48906 alnlen 121 mutations 14 involve-A 14 involve-T 0

TTTGCAGGTTCGGGCTGCTGGCAGGCACGCGAACAATGGCACGAACGCAGGTGCGTCCAACACGAATGCGAACAACACAGCTGCGAATGCGAACGCGAATTACTCGTCGCCCCTATACTTT (Template)
TTTGCGGGTTCGGGCTGCTGGCGGGCACGCGCTCAATGGCACGAACGCGGGTGCGTCCAGCACGGATGCGTACTACACGGCTGCGAATGCGCACGCGAATTGCTCGTCGCCCCTCTGCTTT (Variable)